I am currently using the Wizard genomic DNA extraction kit from Promega to extract DNA from Pichia yeast. However, when I measured the extracted DNA from the kit, I got around 400 ng/ul as measured by UV/VIS. I thought this was fine, but then I ran 100 ng of DNA on a 1% agarose gel with GelRed. I found the band to be actually quite faint, much fainter than the established bands in the ladder from NEB that I was comparing it to. I know UV overestimates but I wouldn't expect a 10 times overestimation, which is what I was seeing. While my 260/280 values were ok, my 260/230 values were not (around 1.4). I am not sure what is going on. I assume some sort of contamination but I am not sure how to get rid of it. I think I am seeing some sort of carbohydrate carryover but I can't be sure. I would assume Pichia acts similiar to S. Cerevisae and the protocol would work the same, but perhaps I am doing something wrong. Please see the link for protocol here and the picture of the gel. the marker is labeled with the sizes and concentrations in order of the bands. You can see the that the intensity is very faint, but I'm not sure if thats a reason for concern or not.

The protocol for yeast can be seen on pg. 13 of the manual.

Any ideas would be appreciated. I need a protocol that would produce very clean DNA that I can quantify with UV/VIS. I do not have access to other quantification methods.

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