Detection of gene fusions in NGS transcriptome data?

10 October 2012 1 5K Report

I have lots of sequencing data for a particular cancer I am studying, and I am bit confused about detection of gene fusions. Please can anyone suggest what are the methods and tools available and which is the best in terms of identifying gene fusions in incompletely annotated genome?

Subhash J Jakhesara

@Nallasivam Palanisamy, Yes Sir, I am working on a cancer which is prevalent in bovines. I have transcriptome data but as genes are incompletely annotated there is a chance that i will miss important fusions relevant to the cancer

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