Does anybody know a lab in Australia or New Zealand who carries out in situ hybridization, FISH, GISH with polyploid plants?

Does anybody know a lab in Australia or New Zealand who carries out in situ hybridization, FISH, GISH with polyploid plants?

01 February 2018 6,889 1 View

Positive selection test?

I have performed a codon based-Z test (MEGA) on a protein coding gene alignment from 30 species to compare the dN-dS values used as a measure of selective pressure indicating neutral mutation...

07 August 2017 1,811 2 View

How to submit complete plastid genome sequence to genbank?

Does anybody have any experiences submitting compete plastid genomes to NCBI. Using their tool sequin is really troublesome and requires a lot of time. Is it easier to deposit the sequences in...

10 November 2016 4,001 3 View

How do I build a phylogeny with missing data and incomplete taxon coverage?

What are the most state-of-the-art methods to build a phylogeny with missing data? I have a 12 genes and 50 species, but some genes are missing for some taxa. There are genes were have only little...

10 November 2015 6,534 7 View

Looking for a bioinformatician for collaborative work to develop a simple software: can anyone help?

04 May 2015 896 0 View

What is the easiest way to create XML format files with the sequences and the tree in the same file?

01 February 2015 7,576 5 View

What are the general perspectives of weed genomics?

I'm preparing some text about weed genomics and I want to emphasize the general biological importance of it rather than the importance of development of specific tools to study a plant group. What...

08 September 2014 875 5 View

How much would it cost to sequence a genome?

Can someone tell a price estimate (EUR) how much it would cost to sequence a plant genome with an approx size of 1200 Mbp? Platforms: illumina/PacBio/454.

08 September 2014 2,437 9 View

Massive parallel sequencing of the plastome of economically important plant species and wild relatives?

I would like to collect some pros and cons for a review/opinion paper and waiting for some comments on why it would be useful to have complete chloroplast genomes sequenced for some economically...

07 August 2013 3,516 2 View

Where can I publish a short note on the occurrence of an invasive plant species or neophyte in a country where it was not recorded before?

One colleague found an invasive plant species not recorded previously in Iran and is asking where to submit a short note. I know that for example in phytopathology there are quite a few options to...

06 July 2013 6,803 10 View

error in running a model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

error in modelling model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MGL tools

20 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

i have some problem with chtMultiRegionSimpleFoam

--> FOAM FATAL ERROR: Maximum number of iterations exceeded From function Foam::scalar Foam::species::thermo::T(Foam::scalar, Foam::scalar, Foam::scalar, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar) const) const [with Thermo = Foam::hConstThermo >; Type = Foam::sensibleEnthalpy; Foam::scalar = double; Foam::species::thermo = Foam::species::thermo >, Foam::sensibleEnthalpy>] in file /home/ubuntu/OpenFOAM/OpenFOAM-4.1/src/thermophysicalModels/specie/lnInclude/thermoI.H at line 66. FOAM aborting #0 Foam::error::printStack(Foam::Ostream&) at ??:? #1 Foam::error::abort() at ??:? #2 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::calculate() at ??:? #3 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::correct() at ??:? #4 ? at ??:? #5 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" #6 ? at ??:?

24 March 2021 0 0 View