Can you recommend a DNA alignment program that can sort heterogeneous sequences into groups and produce multiple consensuses?

04 March 2020 1 7K Report

NGS data and I want to have multiple consensci based on those reads.

You can use mafft with --reorder option for the reordering of sequences based on the similarity. However, for the consensus, you have to manually get the groups of your interest and make consensus sequences. No* software will do this automatically for you.

(* unless you train the software or get your own software program to do it).

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Science method

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