I have tried transforming E. coli BL21(DE3) cells with a heat-sensitive plasmid using electroporation. The plasmid contains an ampicillin resistance cassette. After streaking the cells on an LB agar plate supplemented with 100 ug/ml ampicillin I let them grow in 30 °C (the plasmid is lost at 37 °C). There are no colonies on the plate the next morning. Can anyone help me find the problem with my protocol? I'm doing the following steps:

Plasmid: isolated from another strain, 25 ng/ul in TE buffer

BL21(DE3) electrocompetent cells are from Sigma, comes in 25 ul aliquots, stored at -80 °C

I'm using Bio-Rad 0.1 cm cuvettes.

Following the Sigma protocol:

1.: Take out cells from -80, thaw on ice, thaw the recovery medium at room temperature

2.: Chill a new (not reused) cuvette on ice

3.: Take 1 ul plasmid, pipet it on the 25 ul aliquot and mix it with the pipet tip without pipeting up and down

4.: Transfer 25 ul to the chilled cuvette

5.: Electroporate with following settings: exponential curve, 10 uF capacitance, 600 Ohm resistance, 1.8 kV (time constant is usually around 3.5 which is good according to Sigma).

6.: Immediately put 975 ul room temperature recovery medium on the cuvette and pipet up and down until I can see that the cells are washed out from the narrow part of the cuvette, then I transfer them to a sterile 15 ml centrifuge tube and shake them for 1-1.5 h on 30 °C

7.: Streak them on room temperature LB plate with ampicillin in it

I'm wondering whether I need to incubate the plasmid with the cells for some time after step 3 or step 4. I'm also not sure if the recovery medium and the plate can be at room temperature, or do I need to pre-heat them? I know that pipeting up and down can induce shear stress on the cells, is there any other way I can resuspend them from the cuvette? The cells usually come out from the narrow part of the cuvette as chunks.

Any help is appreciated.

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