I am dealing with metagenome isolation from hot spring water and I want to assess microbial diversity from hot spring water sample.
Will you take water as sample or soil from sides along the flowing water?
water sample can be filtered on 0.22 micron filter, then use this filter to isolate DNA.
Attached you will find a very well described protocol for metagenome isolation from sea water. If you need more specific information, I can send you a protocol that I used to extract DNA from hydrothermal vents.
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Microbial diversity study.
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