Are there any software packages to infer phylogenetic relationship in a network visualisation?

Raymond Kiu @Raymond-Kiu

05 May 2017 1 10K Report

Preferably software to generate network relationship with gene-absence-presence data (binary) will be convenient.

Wesley Neil Hattingh

Hi Raymond,

Have a look at the Phangorn package.

Regards,

https://cran.r-project.org/web/packages/phangorn/vignettes/Networx.html

Badges
Science topic

More Raymond Kiu's questions See All

How to install Quantum Espresso with Intel compiler ?

Hello ! I would like to do band structure calculations of perovsikites materials with quantum espresso. For this I installed the Intel Fortran compiler. This is what I get when I run the...

08 July 2024 1,207 0 View

What research methodology for heritage study you recommend?

To study heritage of an island in the Caribbean what research methodology is recommended?

19 May 2024 1,281 3 View

Emerging concepts of spectrum management and innovations?

What are the news trends are the latest trends in spectrum management and allocations ? And what are some exemples of those trends?

21 March 2024 6,026 0 View

In the concept of positive working relationship, how does socio-cultural & ethnic differences affect the laboratory workflow? How can we deal with it?

This question is derived from the journal "Tenets of Specimen Management in Diagnostic Laboratory", authored by Rajeshwar Reddy Kasarla and Laxmi Pathak. The journal discussed the significance of...

20 February 2024 6,763 3 View

Diesel Electric Propulsion for Offshore Supply Vessels?

Comparing diesel electric propulsion and diesel engine propulsion. Which is more preferable for offshore duties?

29 September 2023 6,746 0 View

Matauranga Māori and conventional research?

Kia ora e te whanau, I just wanted information regarding a good place to find matauranga Māori? I wanted to hear if anyone had any comments on finding a link between matauranga Māori and...

10 September 2023 8,341 0 View

What are 5G and EDGE COMPUTING impacts for Industry of future ?

How 5G and EDGE COMPUTING improve Industry 4.0 performance? Which 5G/MEC architecture for the industrial sector

09 September 2023 4,257 2 View

How can one remove chlorine/organochlorines from coal (coke precisely)?

How can one remove chlorine/organochlorines from coal (coke precisely). The intention is to recover coke for its reuse without the Chlorine or OCPs.

03 May 2023 5,778 1 View

Can I have some examples of maximum instructions per second for a cloud or Edge cloud serveur?

Hello, I'm working on an energy optimization in 5G RAN cloud/Edge Cloud based. And I tried to modelize energy consummed by the RRH and The cloud BBU servers. And I notices THat the anergy...

21 July 2022 6,584 4 View

What are Channels modelization in 5G C bande (3.5GHz) and mMW (26 GHz)?

Hello, I'm working on a 5G ultra dense network scénario. And I need to know the Channel modelization when used 3.5GHz for the macro cell and 26 GHz for small cell

21 July 2022 2,386 4 View

How to normalize and take the significance of the MTT OD values with 3 replicates for the same cell-line?

Hi, I have a question about normalizing the MTT OD values for doing the statistical analysis. So, if we have 3 different plates and we call them 3 different replicates, so, first we would...

07 August 2024 8,106 4 View

If we are using snowball sampling technique, how do we justify the true representativeness of the sample statistically? is there any statistical test?

Are there any statistical methods to justify your sampling technique using SPSS or AMOS?

05 August 2024 9,153 4 View

How to report results of Generalised Linear Mixed Models in a journal article?

Hi everyone, If you have written or come across any papers where Generalised Linear Mixed Models are used to examine intervention (e.g., in mental health) efficacy, could you please share the...

04 August 2024 4,130 4 View

Why 3 replicates for most biological assays? Is it enough to examine the data fits normal distribution?

Just bounced on me. Before statistically analysing significant difference, shouldn't we see if data fits normal distribution first? Is 3 replicates enough to testify the hypothesis of normal...

31 July 2024 8,141 13 View

Posthoc test lettering in JAMOVI?

Does anyone know of a module for the JAMOVI software that is capable of generating mean separations using the classic letters based on post hoc results (e.g., Tukey test)? If, as I believe, such...

31 July 2024 3,333 4 View

Which statistical test should we use?

N=6 Comparing pre and post test likert scale responses. Participants are mix of practicing & preservice teachers.

30 July 2024 7,233 4 View

Is factor analysis with quantitative variables possible?

Good morning, I would like to conduct a factor analysis for my work at the municipal level on a panel datae with variables such as income per capita, unmployement rate, percentage employed in a...

25 July 2024 5,104 4 View

How do I access .vcf files without an R statistical package?

I am currently working on a mendelian randomization study, and I have downloaded the datasets needed from the ieu opengwas project (mrcieu.ac.uk) in .vcf format. I do not have access to an R...

19 July 2024 2,342 5 View

Best statistical test for three groups and binary dependent variable ?

Hello everyone, I am currently working on a project where I aim to analyze color preferences in data visualizations across participants from three different countries. The dependent variable in...

19 July 2024 4,178 2 View

I want to conduct a research using quasi experimental design to test two treatment and one control what type of statistical tools do l use ?

What type of experimental design do l use and what statistical tools do l use for the hypothesis. What is the position of control group in the analysis?. Thanks

18 July 2024 3,581 3 View