Ali Akbar Jamali

13 Questions 11 Answers 0 Followers

Questions related from Ali Akbar Jamali

What are the microRNA-drug interaction databases?

I am looking for databases that contain microRNA-drug interactions. Any suggestions or recommendations?

10 October 2019 5,491 4 View

MicroRNAs in Breast cancer?

I need to get the list of microRNAs involving in breast cancer. is there any review paper, database, online tool, etc.?

07 July 2018 4,852 0 View

Software for Drug and miRNA docking simulation?

I need to study the interaction between some drugs and miRNAs. I was wondering if someone can tell me how can I perform this simulation? Is there any software? or how can I perform this simulation...

06 June 2018 5,980 7 View

How to calculate drugs/compounds similarity?

I need to construct n*n similarity matrix of n drugs/compounds. I need an online or offline tool to construct this matrix. I have the SMILE of drugs/compounds. any suggestion or recommendation?

12 December 2017 870 2 View

How can get 3D structure of my desire protein sequence in PDB format??

I need PDB format of my desire proteins. I have their sequence. how can I get me question solved?

03 March 2016 2,332 1 View

Where & How can I get full 3'-UTR sequences for Bos taurus?

I need full 3'-UTRs for Bos taurus. who knows where I can get this fasta file? please share any link if is possible.

11 November 2014 5,321 0 View

Where can I get validated negative interaction?

I'm in need of experimentally validated microRNA negative interaction. I got validated positive interactions from mirtarbase. But I don't know where to get negative ones. Please share if you have...

04 April 2014 835 1 View

How can I ensure that one microRNA doesn't regulate a specific gene or mRNA?

I need some negative data for running my model. These negative data consists of microRNAs and genes that don't interact with each other. How I get this negative data?

05 May 2013 1,908 4 View

What is the difference between microRNAs with star and without star?

For example what's the difference between these 4 microRNAs? hsa-miR-101* hsa-miR-101 hsa-miR-101-3p hsa-miR-101-5p Which pairs (if) are the same? Which pairs are the same in sequence?

05 May 2013 7,037 4 View

What's difference between "hsa-let-7a-5p" & "hsa-let-7a-3p"? What do 5p & 3p refer to?

05 May 2013 10,200 9 View

how can I convert Fastq to SAM file?

dears: I'm working on chip-seq data. I've downloaded sra format data. to analyze I have to convert them to fastq format and then to SAM file. I made a fastq file but I cant convert it to SAM file?...

12 December 2012 4,413 14 View

Sequence alignment in MATLAB

Who can help me with simple programming in MATLAB for bioinformatics to construct a simple loop to align plenty of sequences?

07 July 2012 5,008 7 View

Can anyone suggest a software to design 3D double stranded DNA models?

04 April 2012 10,037 6 View