We have SSR marker (150) based genotypic data of 190 rice landraces. Want to prepare a research article. Which kind of analysis may be performed with these data? Kindly give your opinion and suggestions.
Regards
Parmeshwar
Hi.
you may use structure analysis, PCA, distance matrix, phylogenetic tree
good luck
hello,
Primarily we should get to know that for what purpose we are carrying out molecular studies and based on that analysis can be done. like,
Stat tools:- ArleQin, GenAlEx, Molkiv, Power marker, NTSYS, STRUCTURE, MEGA and Darwin.
*If you are using genic SSRs-
Stat Tools: - Windows QTL Cartographer, TASEL.
all the best
It is related to your aims of the study. What should you like to know about the land races? As fallowing below you can use
cluster analysis to identifying genetic distance.
AMOVA analysis to detect of variance between inter and intra population diversity
Mantel test to find correlation genetic distance VS geographic distance
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