Why mm9 instead of mm10 in mouse chipseq analysis?

12 December 2015 1 9K Report

When I read recent (2015 papers) mouse chipseq papers, always mm9 (2007) instead of mm10 (2011) was used to map the chipseq reads.

Why is mapping to this much older genome the "standard" instead of using the most updated one?

Jabier Gallego-llamas

The last mm10 reference genome might not be completely annotated which takes some times. Subsequently, people prefer to use a fully annotated version of the genome to do their analyses.

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