As we don't have computer cluster, and also not good at linux system, so i want others do abinitio model for me. i have using robetta generated the 3mer and 9mer fragment of my protein, i have crystallized my protein , but can't get the phase, so i want very much models of it to help molecular replacement. thanks.
Hello Liu-qing,
I think it's unreliable at best waiting for people to run this for you.
However, you have options. You should check out the CCP4 suite - if you can find roughly 30% identity you can likely solve it with their pipeline, i.e. programs like Chainsaw, MrBUMP, etc.
However if you're looking for web-servers to aid in your MR, check out the BALBES webserver: https://openi.nlm.nih.gov/detailedresult.php?img=PMC2394813_d-64-00125-fig5&req=4
And the beta of the Rosetta webserver: http://robetta.bakerlab.org/submit.jsp (which is probably what you're looking for).
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