Which software would you recommend me to use between GROMACS and NAMD?

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Azadeh Kordzadeh

Hi Gustavo

in my view GROMACS is a powerful software that is suitable for biomolecules and also has a lot of tools for analysis of results.

Zhaoxi Sun

Actually, I recommend GROMACS if the system is not that large, e.g. < 100000 atoms. For large systems, I believe that NAMD could be more efficient.