I want to test if there is any difference in two laboratory methods for determining the carbon content in soil. I would calculate the average and standard deviation of the results with both methods (eg. using a ANOVA), but I am unsure how should I design the experiment. For instance, if I would have n=20, should I:
- make 20 x 2 samples from one soil and run both methods on samples from a single soil?
- make 20 x 2 samples from different soils (with varying carbon content) and run both methods on those samples?