Today, we processed tissue from our first GFAP-EGFP mouse (on a C57B6 background). Tissue was fixed with 4% PFA and imaged using a 1.4NA 63x oil immersion lens. We compared this side by side with a section taken from a C57B6 mouse processed using a commercially available antibody from Millipore - also fixed with 4% PFA. The immunohistochemically identified GFAP - is really good but principally only reveals primary and secondary and occasionally tertiary branching. The labelling clearly reveals the major features of the cytoskeleton but nothing more. In contrast the GFAP-EGFP labelling was incredibly intense - and the primary structure was difficult to visualise for the thousands of tiny hairlike branches that made the astrocyte appear to be a fluffy little ball. The differences between the two approaches yield stark differences. What is going on here and what should I believe? Is the labelling from the GFAP-EGFP mice real? Is this really representing what the GFAP cytoskeleton really looks like? Or is this a quirk of genetic wizardry - and the real one to believe is the immunolabelling.