It will be my first time that I work with Glioblastoma cell lines. I would like to know which are the important difference at genetic level between U87-MG and A-172 cell lines and how they respond to TMZ treatment. Thank you for your help!
Check out the attached supplemental material from http://www.ncbi.nlm.nih.gov/pubmed/25100205. It should help you with some of the questions related to TMZ response in GBM cell lines.
There are many resources for finding out mutation status of cell lines. For example here is info from ATCC pertaining to a few cell lines, with respect to mutation status of several genes, including TP53, CDKN2A, PTEN, etc. (https://www.atcc.org/~/media/PDFs/Culture%20Guides/Cell_Lines_by_Gene_Mutation.ashx)