I have been using the "exclude models" check box but there are still many structural sequences in the results. Is there a way to go about the BLAST search which will exclude these sequences? I've been using the nr database because some sequences I need don't show up in Ref Seq, so I'm limited to the nr database.
Zahra Al-Khafaji
you can chose the database you need , this will exclude the proteins in pdb database
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Annemarie Honegger
If you look at the list of accessions names you get, PDB IDs have a length of six letters with an underscore in position 5 (XXXX_X, PDB-ID underscore chain ID, all other sequence IDs seem to be longer.
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