I am working with molecular simulation and modelling, and searching some softwares.
The most used software are Materials Studio and LAMMPS for Moleclar for Molecular Dynamics.
Is there a site/document that talks about it?
Hi Bianca,
VMD is also a good option for construction of initial topologies and analysis of MD simulation results. I have not used it much, particularly I prefer to use tools in the command mode of linux, but there is much literature about it.
https://www.ks.uiuc.edu/Research/vmd/
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