I have generated 3D structure of a small RNA hairpin using simRNA web server. I need to add Hydrogen before its MD simulation in Gromacs.
Please suggest a software for the same.
Hi Ankita,
You can use either of these websites:
1)http://molprobity.biochem.duke.edu/
2)https://swift.cmbi.umcn.nl/servers/html/index.html
Rajesh Pal It worked. Thank you
pdb2gmx should be able to add hydrogen to nuclei acids.
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