I have read several papers like these: twelve strains of fungus Trichoderma harzianum were evaluated against Phytopathogen. So in these case what would be the definition of strains?
In bacteriology, a strain refers to progenies of a pure, isolated culture and the succeeding descendants that can be cultured from it without contamination.
A strain, may also refer to a sub-variety of a microbe that is phenotypically and/or genotypically distinguishable from others. A fungus X may have multiple strains that are characteristically different in terms of certain genetic elements (e.g. rRNA gene). These differences are usually attributed to spontaneous and induced mutations, i.e., exposure of a fungus X to radiation, etc.
You may find this article helpful: http://www.microbiologyresearch.org/docserver/fulltext/jmm/49/5/mjm4905.397.pdf?expires=1511262341&id=id&accname=guest&checksum=811EA3BC5ACA7C4AE7CD8214EF82662F
A strain is an as homokaryotic mycelium than possible, obtained by direct single conidia/spore isolation or from subculture of a mycelium isolate. For sterile fungi, hyphal tip subcultures can minimize the risk of heterokaryosis.The latter can occur with conidia (eg Botrytis cinerea), mycelia (eg Thanetophorus cucumeris ) containing several, possibly genetically different, nuclei.
Thanks. I have another question related to aforementioned. Suppose some spore of same color are infecting other fungal structures in petri plates, Will these spores be called different strains.