I want to find the similarity between a group of protein sequences.
d(x,y)=log(1/1+r), where r=rms(x,y)
http://emboss.open-bio.org/rel/rel6/apps/distmat.html
groups are ordered in an interval, A,B,C,D. how can I see if the difference between them is significant with one time running the process in SPSS? ANOVA?
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