What is your biological sample? If a cell or tissue, just centrifuge and wash off with buffer or water. If a protein then use chromatography methods to purify. If DNA you could just use a PCR clean up kit or Ethanol precipitation.
PEGs are prepared by polymerization of ethylene oxide and are commercially available over a wide range of molecular weights from 300 g/mol to 10,000,000 g/mol.
What is the Mw range of your proteins and what is the Mw of used PEG?
By these information, you can also provide more helps and discussions.