11 February 2014 4 4K Report

Retrieving draft genomes using genomic signatures like tetranucleotide frequency is not a challenging work anymore! Some researchers had claimed it even more accurately than draft genomes obtained from single cell or at least as an useful alternative to single cell separation. There is an exponentially increasing number of announced draft genomes retrieved from a metagenome.

And so I raise my questions:

What could be the value of a draft genome without an isolated strain?

Could we use the information in the draft genome to guide isolation? Is there a successful case of doing so? If so please share with me the paper or resources.

Since the draft genome retrieved is more likely product of bioinformatic computation, how accurate can the draft genome be? How could we best adjust ourselves if a reviewer questions the reliability of the draft genome? Is anyone in the field doing in-silico stimulation to estimate some draft genome binning approach? Please share your knowledge on this topic!

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