Dear Abbas,

List of protein-ligand docking software

The number of docking programs currently available is high and has been steadily increasing over the last decades. The following list presents an overview of the most common protein-ligand docking programs, listed alphabetically, with indication of the corresponding year of publication, involved organisation or institution, short description, availability of a webservice and the license. This table is comprehensive but not complete.

For the list of software programs, please use the following link:

https://en.wikipedia.org/wiki/Docking_(molecular)

Among new software used for the indicated purposes:

1-MOA- Structure-Based Design

https://www.chemcomp.com/MOE-Structure_Based_Design.htm

2http://www.ncbi.nlm.nih.gov/pubmed/21971880-

BSP-SLIM (Free)

3-BLASTER (Free)

http://pubs.acs.org/doi/abs/10.1021/jm9006966

4-AADS

http://pubs.acs.org/doi/abs/10.1021/ci200193z

5-Click Docking

https://mcule.com/apps/1-click-docking/

6-BetaDock (Free)

http://voronoi.hanyang.ac.kr/software.htm

7-FlexAID (Open Source)

http://pubs.acs.org/doi/abs/10.1021/acs.jcim.5b00078

8-GPCRautomodel (Free for academic use)

http://www.ncbi.nlm.nih.gov/pubmed/22691703

9-Id-Target (Free)

http://nar.oxfordjournals.org/content/early/2012/05/30/nar.gks496

10-iScreen (free)

http://link.springer.com/article/10.1007%2Fs10822-011-9438-9

11-rDock (Open Source)

http://rdock.sourceforge.net/

12-SwissDock (Free for academic use)

http://nar.oxfordjournals.org/content/early/2011/05/28/nar.gkr366.full

Hoping this will be helpful,

Rafik

Thank you very much Rafik Karaman