Abbas Khan

4 Questions 8 Answers 0 Followers

Questions related from Abbas Khan

How to fix networkx problem required for gromacs drug topology conversion?

Hello Everyone, I am using gromacs for MD simulation of the protein-ligand complex. I am using CHARMM force field but it is continuously showing the following error. I checked and some people...

10 September 2020 2,199 3 View

How can we merge different Microarray datasets from GEO for DEGs Analysis?

Hi Everyone, I'm using microarray data to identify DEGs and map its PPI network but now I want to use multiple datasets reported by different studies in Acute Myeloide Leukemia (AML). Please...

15 March 2017 305 9 View

I am having a problem while using Amber for MD simulation?

When I am entering energy minimization command "Pmemd.cuda" it is showing Pmemd terminated abnormally. what could be the possible solution? In Molecular Dynamic Simulation this problem is...

02 June 2016 7,323 5 View

Does RMSD vary with protein sequence length?

RMSD is usually taken as below 2 but if the length of Proteins is too high or large, is it affect RMSD or not? if, then how much it vary from sequence to sequence

07 December 2015 4,935 3 View