8 Questions 13 Answers 0 Followers
Questions related from Abbas Khan
Hello Everyone, I am using gromacs for MD simulation of the protein-ligand complex. I am using CHARMM force field but it is continuously showing the following error. I checked and some people...
10 September 2020 2,294 3 View
Hi, I'm doing MD simulation using Amber. Every time when I measure the RMSF and RMSF it is always very high. I don't know what is the problem. THe RMSD remains stable but get high as 6 to 10...
22 April 2017 4,517 5 View
Hi, I'm doing protein-protein docking but the problem is one of the two proteins uses the same domain for other proteins too to interact. I want to know if a single domain interact with multiple...
13 April 2017 8,626 3 View
Hi Everyone, I'm using microarray data to identify DEGs and map its PPI network but now I want to use multiple datasets reported by different studies in Acute Myeloide Leukemia (AML). Please...
15 March 2017 359 9 View
When I am entering energy minimization command "Pmemd.cuda" it is showing Pmemd terminated abnormally. what could be the possible solution? In Molecular Dynamic Simulation this problem is...
02 June 2016 7,392 5 View
I have generated a pharmacophore but required a good software to validate it. DS visualizer is a little bit heavy please let me knon GUI software.
15 January 2016 4,815 2 View
I am working on protein-protein interaction. I am trying to find interaction between two different organisms like host and pathogen can I use cytoscape for protein-protein interaction. also...
19 December 2015 5,614 1 View
RMSD is usually taken as below 2 but if the length of Proteins is too high or large, is it affect RMSD or not? if, then how much it vary from sequence to sequence
07 December 2015 5,000 3 View
