What are the minimum requirements for GWAS in particular for the traits which is very sensitive to environments?

Ajay Kumar Chandra @Ajay_Chandra5

22 February 2023 0 3K Report

GWAS, traits, environment sensitive, etc.

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Science method

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After how much time, I can upload my manuscript on ResearchGate 'publicly' after publication in open-access journals?

Manuscript, ResearchGate, open-access journals

19 July 2023 1,358 1 View

After how much time, I can upload my manuscript on ResearchGate 'publicly' after publication in copyright (subscription-based) journals?

Manuscript, ResearchGate, publication, copyright journals

19 July 2023 9,409 3 View

How the population structure determines that the used accessions in GWAS are admixture?

GWAS, population structure, accessions, admixture, etc.

21 February 2023 2,063 0 View

In association mapping, GAPIT is better tool than GLM and MLM (SLST analysis). how?

Association mapping, GAPIT, GLM and MLM, GWAS

21 February 2023 7,933 2 View

Which is more powerful, GLM or MLM models in association mapping?

GLM, MLM, association mapping, population structure, Kinship data, etc.

21 February 2023 9,518 4 View

For the GWAS, the threshold of p-value is too loosely determined?

GWAS, p-value, threshold value, etc.

21 February 2023 1,679 0 View

Importance of population structure and LD distance in GWAS?

GWAS, population structure, LD distance, etc.

21 February 2023 3,140 0 View

For GWAS analysis: GAPIT is more efficient tool than single locus single trait (SLST) analysis?

Comparative analysis

04 March 2022 742 2 View

Other than ABA, which phytohormones actively induces abiotic stress responses?

Biochemical prospects

25 February 2022 5,397 17 View

Is there any cross-talk occurs between MYC, MYB, ABRE and DREB TFs during abiotic stress responses in plant?

Molecular prospects

25 February 2022 2,894 3 View

How to estimate sample size for GWAS of continuous and discrete traits? What are the pre-requisites?

Genome-wide association study (GWAS) Continuous traits: eg. Height Discrete traits: eg. Eye color

28 July 2024 286 0 View

What is the 'Effect' Column in GWAS Results?

Hello, I received some GWAS results. There is a column for SNP, position, REF/ALT allele, p value, SE, which is pretty straightforward. However, I am confused about the column titled 'Effect',...

03 May 2024 308 1 View

Could anyone share with me a protocol for a GWAS in plants, please. Thank you :)?

I am going to work with A. thaliana, but I am starting to get involved with the technique. Thank you!

13 April 2024 6,003 1 View

How to get the annotation file of the Immunochip array?

Dear community, I'm inputting data from an old GWAS study based on the Immunochip array, and I need the annotation file to conduct a few QC steps. I can't find it on the Illumina website; I...

06 April 2024 8,979 2 View

Is there any available software that can be used to run meta-QTL analysis?

I want to run a meta-analysis for linkage mapping and GWAS QTLs and I will require a software to be able to achieve this.

18 February 2024 264 3 View

How to find SNP point of a SilicoDArT marker in bread wheat genome?

Hi all, I have a set of SNP and SilicoDArT marker data. The SNP points of SNP markers were already provided by the GBS company (Such as G>T). However, the SNP change points (allele change, such...

31 January 2024 5,834 0 View

Who uses GWAS (genome-wide association) & candidate Gene ?

I want to know what is more recommended for Specific SNPs (single nucleotide polymorphism) Who has good experience, What is more recommended GWAS or candidate gene? for Specific SNPs in specific...

29 November 2023 5,337 1 View

Hello! I am working GWAS. I am facing a problem while performing the GLM model. Thus, may I have solution from the specialist?

myY

27 November 2023 952 0 View

Is the SNP significant for the phenotype or is it a false positive?

I performed an analysis for a specific gene/region of interest using GWAS summary statistics for a binary phenotype (+/- disease). Using the corrected p values in the summary statistics and...

05 November 2023 9,886 3 View

Suitable Models and methods for GWAS in plants?

Hello dear researchers, Which methods and models are suitable for GWAS in heterosis population in plants? Which methods and models could be used for GWAS in inbred population in plants? and also,...

25 October 2023 2,292 0 View