Dear Researchers,
DNAbinder, DNABIND and HMMER are useful for web servers for predicting DNA-binding proteins and they take many sequences at a time. BindN, DR_bind, DNA Bind Prot, metaDBSite, and DBD-Threader are also useful web servers but these took only one sequence at a time, so this creates limitations if the job is to analyze many sequences.
If there are other such useful programs or servers, please let me know.
Thank you for help.