6 Questions 8 Answers 0 Followers
Questions related from Mahendra B Thapa
A pdb file (biological assembly of a virus capid) has 24 model and each model has 3 chains A,B and C. I am interested to keep only those models which are in contact with chain A of model 1....
24 June 2016 5,912 3 View
Dear researchers, I use 'ModLoop server' to add coordinates of missing residues in a pdb file. I tried to use 'Swiss model server' for the same purpose but it didn't work by some reasons. If there...
26 January 2016 5,331 9 View
Dear Researchers, DNAbinder, DNABIND and HMMER are useful for web servers for predicting DNA-binding proteins and they take many sequences at a time. BindN, DR_bind, DNA Bind Prot, metaDBSite, and...
16 July 2015 8,364 3 View
Dear Researchers To find the sequence entropy of a protein (say, pdb code 4ICB) / DNA , I am using some codes written in C program. For this, I need to use BLAST and ClustalW2 , and resulting...
19 April 2015 3,099 8 View
Dear Researchers, I am interested to measure the hinge motion around the hinge region of a protein and visualise the motion as well. By normal mode analysis and all-atom simulation, I generated...
30 September 2014 581 4 View
Dear Researchers, I have been using ModLoop web-server to add residues which are not given in pdb file of a protein; I mean to fill the gap in the pdb file. I am interested to use another loop...
16 August 2014 4,639 2 View
