What are the best parameter settings for SNP detection and heterozygous identification in Geneious?

Harindra Sathkumara @Harindra-Sathkumara

10 July 2014 1 6K Report

I have few raw abi files and I'm trying to figure out if there are any heterozygous bases and also to do SNP/ variation detection using Geneious r7. I have attached the figures from Geneious where it requires to fill some parameters prior running the test. Can anyone offer me optimum values as well as a brief description of what they really mean? Thanks.

Victoria Fischer

I have the same question. I see that your question dates back a few years. Did you figure out all the details? Do you have a resource, or can answer?

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