What are the best HW p-value & MAF cutoffs based on my study ?

08 March 2024 0 6K Report

Hello,

Based on my research question, I would like not to exclude variations that are out of Hardy-Weinberg equilibrium, and I also want to have rare variants in my study ( i mean the MAF threshold must be include rare variants). are these cutoffs appropriate for my analysis:

- HW P-values = 0.001

- MAF = 0.001

I appreciate your help.

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