There are varieties of tools available for 3D modeling of protein structure prediction from Amino acid sequence like SWISS-MODEL (https://www.swissmodel.expasy.org/), QUARK (https://zhanglab.ccmb.med.umich.edu/QUARK/), and I-TASSER (https://zhanglab.ccmb.med.umich.edu/I-TASSER/) but the selection of algorithm is entirely depending on the nature of the research and your objective. Furthermore, I recommend the paper https://www.nature.com/articles/d41586-019-01357-6