Software for Affymetrix miRNA 3.0 array data analysis? What is advantage of using Gene spring and what are limitations of expression console?

03 March 2014 1 9K Report

I am learning Affymetrix miRNA 3.0 array data analysis? I want to know the difference between Gene spring and expression console? How do they differ in statistical analysis?

Tommaso Mazza

I don't know GeneSpring, but I can say that Expression Console (Affymetrix) does primary analyses only (quality control + normalization). Maybe, you are referring to TAC (Affymetrix), which - however - can only perform one-way ANOVA test to detect differential expression. Anyway, if you can pay something, I'd suggest Partek! cheers.

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