Hi researchers,
I have a snRNA Seq dataset, and I am analysing it using R Seurat package.
My task is to find out if the expression of a certain genes in the cells leads to differences in the gene expression profile in the same cells. Important to mention is, the expression of the gene of interest is not a column in the metadata, so in order for me to find the cells that expressed the gene I subsetted my data like this:
#subsetting the data based on gene expression positive_cells 0) negative_cells