Does anyone know any database name for obtain mass spectrometry based SARS-CoV-2 peptide sequences?

I have identified peptide sequences of SARS-CoV-2 by in-silico method. I am attempting to validate all these sequences with wet lab mass spectrometry based peptide sequences. SARS-CoV-2 specific...

22 December 2020 3,445 3 View

In a quantitative research is it must to mention the research questions?

If research questions is must in quantitative research then what will be the sequence of research questions, objectives and hypothesis in a research proposal?

05 September 2012 150 3 View

I am trying to do transfection in Mammalian cells (U2OS and HeLa) with Lipofectamine3000.

I am trying to do transfection in Mammalian cells (U2OS and HeLa) with Lipofectamine3000. Can anyone suggest how much Lipofectamine is optimal and after how much time I should add complete media....

01 January 1970 2,433 1 View

How could the concentration from RNA extraction is really low?

Hello everyone, currently, I'm trying to do RNA extraction from seeds of Arabidopsis. I'm using the protocol below: RNA isolation from siliques, dry seeds, and other tissues of... I use about...

17 February 2021 7,583 4 View

Hi, can anybody help me with the suggestions how can I amplify a stress induced gene of 1107 bp?

I am trying to amplify the TGA1 (Transcription factor 1 ) of Arabidopsis ,which is 1107 bp. I have treated the plants with Salycylic solution over night and extracted the RNA and make cDNA. I...

17 February 2021 7,802 2 View

How can I make a center of mass vs time graph?

I have a trajectory file of about 1000 frames which I have calculated a center of mass for each frame. I would like to use the first frame as a reference and see how much the center of mass...

04 February 2021 5,774 1 View

Which photsynthetic machine is good to use for measruing photysnthesis and CO2 assimilation for Arabidopsis?

Hi all, we are looking to buy a photosynthesis meter that can potentially measure photosynthetic rate, stomatal conductance, CO2 assimilation, PS1 and PSII efficiency (if possible), etc. it would...

02 February 2021 5,223 3 View

How do I measure Arabidopsis germination rate?

Hi there, I'm looking for a way to measure the Arabidopsis germination rate, like what media I should use to plant the seeds and what indicator I should see for germination. I'm planning to...

02 February 2021 4,785 3 View

Equation to calculate Chlorophylls and carotenoids concentrations from a MeOH:HCl 1% (v/v) plant extract solution?

Hello everybody! I have performed an acidic MeOH:HCl 1% (v/v) plant extraction from Arabidopsis leaves to calculate Anthocyanins concentrations based on: Rabino, I., and Mancinelli, A. L. 1986....

25 January 2021 3,686 2 View

Can A. thaliana splice algae genes?

24 January 2021 329 2 View

Can you suggest some plant transformation vectors that I can use for the expression of GFP/YFP-tagged protein of my interest?

I want to generate stable Arabidopsis transgenic lines expressing my protein of interest fused with GFP/YFP under the control of its native promoter. I want this for localization studies. Please...

23 January 2021 2,790 3 View

Can use Unigenes from RNA sequences for overexpression studies (transformation) without requiring a specific plant genome?

Dear researchers: If the plant genome has not been released yet, can Unigenes from RNA sequences be used after BLAST and confirmed with known Arabidopsis genes for function/overexpression...

20 January 2021 5,557 2 View

What is the best way for mobility estimation in GROMACS?

I need to estimate the mobility of some atoms in the molecule within a molecular dynamics simulation and compare the values for different simulations. I use trjconv -fit rot+trans to fit C-alpha...

19 January 2021 531 3 View