Veerbhan Kesarwani

4 Questions 4 Answers 0 Followers

Questions related from Veerbhan Kesarwani

Significant threshold RMSD value of similar protein between two different species ?

Hello everyone, I am trying to compare a similar protein (ATA7) between two different species i.e. Arabidopsis thaliyan and A. lyrata (protein identity is 98 %). The RMSD value is 0.6 Å of ATA7....

30 March 2023 2,130 0 View

How to compare the structural changes in protein before and after MD?

Hello Dear All Researchers, I have done the 150ns MD of protein and ligand and I am trying to compare the structural changes in protein before and after MD. So if any one know, how to see and make...

28 January 2023 5,040 2 View

Error in creating a topology file of protein and DNA aptamer complex?

Tried to create a topology file for protein+DNA complex using CHARMM36 ff in Gromacs 2020.3. When i am running the commands the following error is occurred -: gmx pdb2gmx -ignh -f Complex.pdb...

19 June 2021 5,566 0 View

Does anyone know any database name for obtain mass spectrometry based SARS-CoV-2 peptide sequences?

I have identified peptide sequences of SARS-CoV-2 by in-silico method. I am attempting to validate all these sequences with wet lab mass spectrometry based peptide sequences. SARS-CoV-2 specific...

23 December 2020 3,589 3 View