I am working on microbial contamination of groundwater, and analyzing the pathogenic bacteria (more than ten), Since I am not into bioinformatics, but I am too curious to apply any such tool to include in my research. Seeking for suggestions..
Ashwani, if you could explain a little about what you want then it would be easier to suggest an apt tool.
Dear shrijit ,
As I said, bioinfo. is totally strange to me, so I would like to have suggestions from the experts. I have characterized several strains of bacteria, (as my work is ground water contamination with bacteria), what are the bioinformatic tools and approaches I can use with those microbes as add-on to my research ??
Dear Ashwani, If you have identified peculiar organisms, you can approach for their phylogenetic analysis.
Well Ashwani, why I asked you to explain was because you had just mentioned that you wanted to analyze the pathogenic bacteria. Analysis of what... their phylogeny?.. their interactions???... their genes/proteins etc....
P.S. my name is spelt as Sreejith and not Shrijit :-)....
Hi,
There is this link in the EBI website about some real world applications on bioino. You may find it useful.
http://www.ebi.ac.uk/2can/bioinformatics/bioinf_realworld_1.html#2.7
Just to give you a little bearing, follow the link below to the EMBOSS home page. It contains a short list of programs that you may use, to analyze data.
http://emboss.sourceforge.net/apps/cvs/emboss/apps/index.html
Again, as Sreejith said, if you can tell us what you'll be analyzing, we can help you out even more.
Kind regards,
PH
Thanks a lot specially sreejith sir for your kind reply. please refer any tool where we would find their special character identification tool to find their pathogenic level as well as useful characteristics.
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