When transitioning from Optimal Cutting Temperature (O.C.T.)-embedded tissue to paraffin embedding, here’s how you can effectively remove the O.C.T. and proceed with paraffin fixation:
O.C.T. Removal:O.C.T. is commonly used for cryosectioning, but it interferes with paraffin embedding due to its high polyethylene glycol (PEG) content. To remove O.C.T. from your tissue:Snap freeze the O.C.T.-embedded tissue in isopentane mixed with dry ice. Keep the tissue at -70°C. Remove excess moisture from the frozen O.C.T. block using paper towels1.
Paraffin Embedding:Paraffin embedding provides structural support during sectioning and preserves tissue morphology. Follow these steps: a. Fixation:Fix the tissue immediately after dissection using 4% formaldehyde (or other appropriate fixatives). Fixation typically takes 4 to 24 hours (avoid overfixation, which may mask antigens). b. Dehydration and Clearing: Dehydrate the fixed tissue through graded alcohols. Clear the tissue using an antemedium. c. Infiltration with Paraffin: Infiltrate the tissue with paraffin. Embed the tissue in paraffin blocks for microtome sectioning. d. Sectioning: Cut thin sections (usually 4–5 µm thick) using a microtome. Mount the sections on positively charged slides. e. Staining: Perform routine Hematoxylin and Eosin (H&E) staining or other specific stains as needed23.
Remember that the choice of fixative depends on the antigen and the desired detection technique. Proper fixation ensures reproducible staining and successful antigen detection. If you encounter any difficulties during the process, consider collaborating with labs that specialize in histology services4
Unfortunately, once the tissue is frozen you're kind of out of luck. You can try a slow thaw and then repeated PBS washes to remove the OCT and sucrose cryoprotection.
If the tissue is just in OCT and not frozen or just in sucrose, that's significantly easier. You can get a good idea how how much sucrose is left in the tissue by using different gradients. If the tissue still sinks in let's say, 5% sucrose, you have some more washes to go. Once the tissue is fully cleared of sucrose, I would fix again (especially if you're thawing a block) for another 24 hours before paraffin processing.