It can be a naive question, but... If a historical expansion event happens, which is evident in mtDNA sequences, is it possible that expansion might have obscured  signals from a past divergence event? If so, should we see this obscuring effect in both nuclear and mtDNA markers to the same extent? Or do demographic changes affect mtDNA more dramatically compared to nuclear DNA because mtDNA has a smaller effective population size? More specifically, is it possible that nuDNA maintains the signal from past divergence event whereas mtDNA loses it after a population expansion event?

Thank you.

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