I am looking for a software/database that will be able to predict the likelyhood of a specific ligand binding to an array of possible receptors (looking for new ones). Most of the packages I've found rely on a protein code to identify the ligand, but the problem is the ligands I'm testing don't have such codes and are just short peptides.
Can anyone recommend a software/database that can predict ligand binding to many possible resptors based on amino acid sequence?
Can you please just check the PASS software for the requirements of multiple predictions, not sure whether this was AA based!
William Macintosh-Smith
Please check the ChEMBL database as a manually organised database of biological compounds with drug-like properties. Hope it could be fruitful.
Hi William Macintosh-Smith ,
Can you please specify what you are willing to study precisely, you want to do docking to that peptide into many proteins ? if this is the case there is a software can do this, or you just want to identify this peptide, because a ligand or peptide with no code is something very common in the field.
Hi Abderahmane Linani,
I am attempting to discover new receptors for short peptides with any software that will require the peptide sequence and not a code for a protein. the software needs to be able to predict docking based on the sequence of the peptide.
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