Hello,

I would like to analyse a peptide by LC-MS/MS. I am not experience in peptides. I would really appreciate if somebody could help me.

1. I have the sequence of the peptide and I would like to know if there is some software program for predicting the highest intensity charge state of my peptide in my Triple Q.

With the FASTA sequence I would like to determine the best parent (probably charged +7).

2. Then, I would like to fragment this and to identy the fragments.

Is there any open software which I can do this?

Thanks a lot for your help.

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