Hello,
I would like to analyse a peptide by LC-MS/MS. I am not experience in peptides. I would really appreciate if somebody could help me.
1. I have the sequence of the peptide and I would like to know if there is some software program for predicting the highest intensity charge state of my peptide in my Triple Q.
With the FASTA sequence I would like to determine the best parent (probably charged +7).
2. Then, I would like to fragment this and to identy the fragments.
Is there any open software which I can do this?
Thanks a lot for your help.