Hi, I am working on 200 different organisms from NCBI. I have Accession id ( e.g. NZ_KQ956078.1) of those organisms but need the corresponding information on SRA, Assembly number, Organism name etc. Obtaining those information from NCBI is easy but searching one by one with accession is time killing. So, it would be helpful to have a script to obtain such information from NCBI at once/automatically. Is there any script available?
You can use NCBI E-utilities.
https://dataguide.nlm.nih.gov/eutilities/utilities.html
https://www.biostars.org/p/221188/
Hi, Sureshkumar v. ,
I tried both the options, but couldn't map back the NZ with GCA. Do you know how can I obtain assembly_report.txt file? or Do you have any other solution? I got assembly_summary.txt file but this file doesn't contain NZ ids.