Recently I fabricated PEDOT:PSS resistor in which PEDOT:PSS is patterned through photolithography. I have a doubt that whether PEDOT:PSS dissolves in acetone at the time when I tried to remove PPR from my substrate?
It should not be soluable in acetone. I have used PEDOT:PSS , patterned using photlithography and removed the resist using acetone. But in my case I used to protect the pedot from being etched, hence the acetone had a short exposure to the pedot. Water had more adverse effects on the adhesion of the PEDOT:PSS though. Have a look at the following paper.
Article Development of a conducting polymer cell impedance sensor
It will never dissolve obviously but from a fabrication point of view , you can have adhesion problems which arise due to absorption of water and weakening of the binding between the substrate and the patterned layer.
I think its important to know what kind of PEDOT:PSS you are using, the commercial ones usually have additives, perhaps that makes a difference in this case. Also what is your substrate? If it starts to peel off, that means its an adhesion problem more than any solubility issue. I used to use a grade from Agfa that had adhesion promoters which worked quite well on glass (which has notorious adhesion problems with conducting polymers). Given you have to put a resist on top, you are not left with much of a choice and have to use some solvent, so I would presume that adhesion problems will persist. All I can say is that perhaps instead of acetone, you could re-expose the resist and use the developer to remove the layer, unless you do a negative resist in which case this wont work.
You can use ORTHOGONAL photoresist instead of normal photoresist. That helps to protect PEDOT:PSS while etching the photoresist. you do not need to expose the PEDOT:PSS with acetone. In my experience, PEDOT:PSS does not dissolve in acetone but the conductivity after exposure might be changed.