I'm currently investigating a lncRNA and i'm very curious to see what the subcellular location is due to silencing strategy and prediction of lncRNA function. Could i somehow separate the nucleus from cytoplasm and isolate/qPCR to find out where expression is present?
I was looking at fractioning protocols, but these are mostly aimed at proteins, if at all possible, could you recommend me a protocol for RNA analysis?
Huge thanks in advance!