I'm having issues with doing direct immunofluorescence on tumors, I'd like to stain for CD3 (FITC) and CD8 (eFluor 615) with DAPI counterstain. After sectioning and mounting flash-frozen tissue, I use this protocol:
-fix 10 min in ice-cold acetone
-rehydrate with 3 PBS washed
-block with 5% BSA for 10 min
-wash with PBS 3 times
-incubate with direct antibody 1 (CD3) for 8 hours in humid, dark box at 4C
-wash with PBS 3 times
-incubate with direct antibody 1 (CD8) for 8 hours in humid, dark box at 4C
-wash with PBS 3 times
-incubate with DAPI 10 min
-was with PBS 3 times
-coverslip with Fluoromount
I don't think the antibodies are working at all, I've attached pictures of what I'm seeing. It seems like DAPI is working okay but still not great, and the antibodies aren't doing anything but leaving debris on the tissue. I think I'm just getting tissue autofluorescence in the FITC channel. Anyone know what could be wrong with my protocol? I suspect its something with the fixation, but I dont want to waste a ton of antibody testing different methods of fixation.