I carried out patchdoc for Protein-DNA and got the result but i need a tool for find interaction energy

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Tanuj Sharma

hi Jimmy

ZDOCK and haddock or any other protein - DNA docking software may help you out.

they mostly give gross interaction energy. But if you are looking to calculate individual energy components, then try out the other softwares like APBS softwares as plugin in VMD tool. For that you have first perform MD studies.

regards

Tanuj

Jamoliddin Razzokov

http://rashmikumari.github.io/g_mmpbsa/

http://pubs.acs.org/doi/abs/10.1021/ci500020m

http://www.sciencedirect.com/science/article/pii/S0010465514003154