The SHAKE series of programmes are basically for 1-D wave propagation, convolution / deconvolution studies for given ground motion across soil layers. Similar software is DeepSoil, which can do this job.
SHAKE series of codes are for one dimensional (1-D) wave propagation. If you have SHAKE2000 software with licence, you may go through the manuals and examples. A few examples will be installed along with main software during installation. If U don't have SHAKE2000 (full version), try EduShake, which is for learning purpose and free to download and use (of course, with limitations).