Hi, Judith!

Moreover, you still can use boot.ppfst to test the significance of your FST value.

Previously, you have gotten many tables because you have many markers and these tables are Variance Components.

Try to do it:

1) Create a object to store your output [eg: my_object

Dear Judith,

I'm not an expert of this package but probably what you are looking for is one among the following functions (all available in the 'hierfstat' package):

1) 'test.between' ;

2) 'test.between.within' ;

3) ''test.within' .

Please, note that in all these functions you can specifiy the number of permutations (e.g. nperm=10000) .

I hope These will help you.

Best wishes

Pietro

Hi, Judith!

Moreover, you still can use boot.ppfst to test the significance of your FST value.

Previously, you have gotten many tables because you have many markers and these tables are Variance Components.

Try to do it:

1) Create a object to store your output [eg: my_object