I have human eye cryosections that I performed immunohistochemistry on . The issue I'm having is visualizing my antibodies in the retinal pigment epithelium layer because it has an autofluorescence which obscures the signal of the antibodies
The autofluorescence of the retinal pigment epithelium is a problem.
I have used 0.3% KMnO4 for bleaching the pigment epithelium layer on cryosections. Also, I have used Oxalic acid in a concentration below 1%. Incubation times varied from 5-15 minutes at RT. In both cases I performed the bleaching before the blocking step in IHC.
Be carefull with the sections on your slides because the bleaching treatment makes them even more vulnerable.
I would suggest you to just try out different conditions (concentrations, temperature and incubation time).
I tried both seperately and in the end I combined them. So an incubation with one, followed with washing and an incubation with the other. This was succesfull. I would suggest you try this out. If your slides are too bad after treatment, decrease concentration and/or incubation time.