Please look at the following below links which may help you in your analysis:

https://academic.oup.com/bioinformatics/article/33/13/2042/3059929

https://www.biostars.org/p/105223/

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538770/pdf/gkl227.pdf

https://www.sciencedirect.com/topics/medicine-and-dentistry/peptide-mapping

Thanks

With map, do you mean the homology search?

You can use Blast or Diamond, make a local database of your reference dataset and run the sequence similarity search in batch mode.