I have installed M3GNet to do molecular dynamics,
but there aren't any manuals or guide to implement the program.
Hello, I am working on drawing a phylogenetic tree with samples sharing some somatic mutations. The basic process of my work is similar to this article. Population dynamics of normal human blood...
14 October 2020 8,078 4 View
As you can see in the image file, I want to make Br-C12-dithiocarboxylic acid form. However, I don't know how to control the amounts of reactant. I tried 'Mg:alkane=1:1 equiv' but many byproducts...
18 September 2020 3,970 4 View
Hello, I am doing fibroblast, stem cell culture for sequencing. (From primary culture to the end) Since FBS is expensive, there are some protocols that mix FBS and horse serum (1:1) I have done...
10 September 2020 8,137 3 View
I have done spheroid culture with various cancer cell lines The spheroid was formed from single cells. The method was like the added picture (not curved bottom well, matrigel, etc) The question...
30 March 2020 9,817 3 View
In lithium metal battery with transition metal cathode, they use lipf6 salt and different electrolyte. However, in lithium sulfur batteries, almost studies were conducted under dol dme electrolyte...
30 March 2020 9,603 4 View
Hi all, I seeded 1 X 10^4 of SH-SY5Y on 96 well plate and grew them overnight. For drug experiment, I removed all media using pipette and treated media mixed with drug. However, I found that some...
23 March 2020 8,924 4 View
I'm planning to extract Polysaccharide from Codium fragile, which is green algae. I used to use hot water for extraction for 3 hours and then use Ethanol to get them. I tried this way, but It...
17 September 2019 4,558 5 View
I understand that incresing number of layers causes high reflectance..but I don't know the minimum condition that particle can be used as photonic crystal..
08 August 2019 1,413 1 View
I am working on Epithelial to Mesenchymal Transition (EMT) in A549 cell line by treating positive inducers such as EGF to up-regulate the mesenchymal markers like vimentin. I'm doing western blot...
22 May 2019 3,053 1 View
https://www.thermofisher.com/order/catalog/product/L3224 This is the live/dead cell assay kit I will use for my experiment. But I have to fix samples (cancer cells) before using this kit, maybe...
29 April 2019 3,481 3 View
How to calculate the RMSD values for a MD simulation using MOE?
07 August 2021 0 0 View
When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.
16 June 2021 0 0 View
Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...
03 March 2021 5,978 5 View
Hello, I'm fairly new to ARENA and I have the following problem: I have two queues in which, in each queue, a different order type arrives (both having an arrival rate of exponential 10). Order...
02 March 2021 2,431 3 View
Hello, I have a mechanism where air rises due to convective flows. In this simulation, nothing is driving the air except this. I understand that the Boussinesq approximation only works for small...
02 March 2021 4,910 3 View
Hi, I am trying to construct a multi-layer fibril structure from a single layer in PyMol by translating the layer along the fibril axis. For now, I am able to use the Translate command in PyMol...
02 March 2021 4,569 4 View