How to generate fragment libraries for a protein sequence?

More Pavan K Madasu's questions See All

What is the meaning of Positive delta G In Free Energy calculation between protein and Ligand?

I have done Gromacs for FEP ( Free energy perturbation) between Protein and Ligand in Water solvent, with Positive Ions. I got DG 26.02 +/- 3.14 Kj/Mol. I got positive Delta G. How i can...

18 August 2020 736 4 View

How can i prevent the peak tailing in HPLC?

I am using hexane sulfonic acid as ion pair reagent. pH is 3.85. Mobile phase is Buffer and methanol 35:65 ratio. seperated two analytes in this method. C18 column with end cap i am using. How can...

30 August 2019 8,948 6 View

I wish to formulate trichoderma spore in talqa powder and liquid form. any one please suggest me ?

i wish to formulate trichoderma spore in talqa powder and liquid form. any one please suggest me ?

04 August 2019 4,211 3 View

Kindly, name some Fast publication, paid SCOPUS / ESCI / SCI indexed journals in the area of Optimization?

Fast Publication Journals in Optimization

11 February 2019 963 13 View

Can anyone provide me and address of any such industry in India which helps me in extracting essential oil from my research plant species?

i have been working on synthesis of nanoparticles using plant extract. while going through literature i found that some researchers have extracted essential oils from plants.. in this regard i...

18 January 2019 2,895 5 View

Regarding starting resesarch on particle and nuclear physics?

I want to learn particle and nuclear physics. Please give some suuggestions. What type of books should I read for begineer

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Hi all..! Can anyone knows where is the high temperature wear test machine is available in India?

19 September 2018 8,241 4 View

Can anyone have detailed procedure of preparation of wright stain?

Malaria stain preparation

03 September 2018 2,183 4 View

How to configure the Instrument using Labview without using its specific instrument drivers?

how can i configure any instrument using VISA instrument drivers rather than its specific instruments drivers. need help for control of instruments using VISA drivers

30 July 2018 9,329 6 View

Why there is a change in the trend of the main effect of Garnet size on the depth of cut in the abrasive waterjet machining process?

Am working on the abrasive waterjet machining of Brass, during the analysis of variances, it was found that when the abrasive grain size was decreased from 60mesh to 80mesh, there was decreasing...

24 July 2018 6,947 9 View

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

03 March 2021 8,796 3 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

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Do we need to write protocol for a second study of a systematic review that has been registered and published?

I have conducted and published a systematic review and meta-analysis research with the topic related to public health and health pomotion (protocol was registed in PROSPERO). Now we want to...

03 March 2021 8,920 3 View

How to increase a model accuracy ?

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03 March 2021 6,994 5 View

Do I need to do linear regression before running mediation analysis using PROCESS MACRO by Hayes ?

I just wanted to check if I need to run a linear regression separately if I am using PROCESS MACRO to run mediation analysis. Thank you.

02 March 2021 4,359 3 View

Sample dilution for quantitative analysis using ELISA?

If the detection range is in ng/ml but the reference range is in ug/ml for a molecule or protein in serum or plasma .how to dilute and what is the initial volume to be taken for quantitative analysis

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Is There Any Feasible Method To Test Fluorescent Compounds Other Than Fluorescence Spectrometers ??

Is There Any Feasible Method To Test The Efficiency Of Fluorescent Compounds Other Than UV Spectrometers ? Suggestions Would Be Appreciated !

02 March 2021 5,785 3 View

How to calculate average trend in maximum annual NDVI from MODIS?

I am wanting to calculate the average trend in maximum annual NDVI in Iceland from 2010-2020 using MODIS MYD13Q1 V6. How would I do this? I have currently inserted the NDVI bands from the MODIS...

02 March 2021 752 2 View

Sutanu Mukhopadhyay

You may try ColabFold: https://github.com/sokrypton/ColabFold

Hafijull Mondal

Article Customised fragments libraries for protein structure predict...

Shima Shafiee

Cons of KNN The requirement of high storage. Prediction rate slow. Stores all the training data. The algorithm get slower when the number of examples, predictors or independent variables increases.

It is advised to use the KNN algorithm for multiclass classification if the number of samples of the data is less than 50,000. Another limitation is the feature importance is not possible for the KNN algorithm.